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Notebook Computer

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1. The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks (PubMed)

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks Analysing models of biological networks typically relies on workflows in which different software tools with sensitive parameters are chained together, many times with additional manual steps. The accessibility and reproducibility of such workflows is challenging, as publications often overlook analysis details, and because some of these tools may be difficult to install (...) Windows. The embedded computational workflows are edited with a Jupyter web interface, enabling the inclusion of textual annotations, along with the explicit code to execute, as well as the visualization of the results. The resulting notebook files can then be shared and re-executed in the same environment. To date, the CoLoMoTo Interactive Notebook provides access to the software tools GINsim, BioLQM, Pint, MaBoSS, and Cell Collective, for the modeling and analysis of Boolean and multi-valued

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2018 Frontiers in physiology

2. Development and Validation of a Portable Hearing Self-Testing System Based on a Notebook Personal Computer. (PubMed)

Development and Validation of a Portable Hearing Self-Testing System Based on a Notebook Personal Computer. Hearing loss affects more than 27 million people in mainland China. It would be helpful to develop a portable and self-testing audiometer for the timely detection of hearing loss so that the optimal clinical therapeutic schedule can be determined.The objective of this study was to develop a software-based hearing self-testing system.The software-based self-testing system consisted (...) of a notebook computer, an external sound card, and a pair of 10-Ω insert earphones. The system could be used to test the hearing thresholds by individuals themselves in an interactive manner using software. The reliability and validity of the system at octave frequencies of 0.25 Hz to 8.0 kHz were analyzed in three series of experiments.Thirty-seven normal-hearing particpants (74 ears) were enrolled in experiment 1. Forty individuals (80 ears) with sensorineural hearing loss (SNHL) participated

2018 Journal of the American Academy of Audiology

3. Notebook Computer

Notebook Computer Notebook Computer Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Notebook Computer Notebook Computer Aka: Notebook (...) controls (check brightness/contrast) LCD panel issue (try connecting to external display) Computer in hibernation mode Dim Display Mistakenly set LCD controls (check brightness/contrast) Battery power-saving mode decreases power to monitor (plug into wall outlet and should brighten) Flickering Display Manufacturer defect LCD panel damaged External monitor not connecting Try alternative display output port on notebook Try various video outputs (cycle through options) from laptop to external monitor Try

2018 FP Notebook

4. Notebook Computer

Notebook Computer Notebook Computer Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Notebook Computer Notebook Computer Aka: Notebook (...) controls (check brightness/contrast) LCD panel issue (try connecting to external display) Computer in hibernation mode Dim Display Mistakenly set LCD controls (check brightness/contrast) Battery power-saving mode decreases power to monitor (plug into wall outlet and should brighten) Flickering Display Manufacturer defect LCD panel damaged External monitor not connecting Try alternative display output port on notebook Try various video outputs (cycle through options) from laptop to external monitor Try

2017 FP Notebook

5. Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial) (PubMed)

, the CoLoMoTo Interactive Notebook provides a joint distribution of several logical modeling software tools, along with an interactive web Python interface easing the chaining of complementary analyses. Our computational workflow combines (1) the importation of a GINsim model and its display, (2) its format conversion using the Java library BioLQM, (3) the formal prediction of mutations using the OCaml software Pint, (4) the model checking using the C++ software NuSMV, (5) quantitative stochastic (...) Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial) Boolean and multi-valued logical formalisms are increasingly used to model complex cellular networks. To ease the development and analysis of logical models, a series of software tools have been proposed, often with specific assets. However, combining these tools typically implies a series of cumbersome software installation and model conversion steps. In this respect

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2018 Frontiers in physiology

6. Family Practice Notebook Updates 2018

Family Practice Notebook Updates 2018 Family Practice Notebook Updates 2018 Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Family (...) Practice Notebook Updates 2018 Family Practice Notebook Updates 2018 Aka: Family Practice Notebook Updates 2018 , FPN Updates 2018 II. Updates: December 2018 (er, cv, bleed) Primary priority is the identification of as shock cause, localizing site, and rapidly stopping further bleeding Avoid overly aggressive crystaloid infusion, and aside from , allow permissive with SBP 80-100 mmHg Rapidly transfer to and operating room for definitive management for persistent compartment Consider TXA ( ) within

2019 FP Notebook

7. Neurophysiological analytics for all! Free open-source software tools for documenting, analyzing, visualizing, and sharing using electronic notebooks (PubMed)

Neurophysiological analytics for all! Free open-source software tools for documenting, analyzing, visualizing, and sharing using electronic notebooks Neurophysiology requires an extensive workflow of information analysis routines, which often includes incompatible proprietary software, introducing limitations based on financial costs, transfer of data between platforms, and the ability to share. An ecosystem of free open-source software exists to fill these gaps, including thousands of analysis (...) and plotting packages written in Python and R, which can be implemented in a sharable and reproducible format, such as the Jupyter electronic notebook. This tool chain can largely replace current routines by importing data, producing analyses, and generating publication-quality graphics. An electronic notebook like Jupyter allows these analyses, along with documentation of procedures, to display locally or remotely in an internet browser, which can be saved as an HTML, PDF, or other file format for sharing

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2016 Journal of neurophysiology

8. Family Practice Notebook Updates 2014

Family Practice Notebook Updates 2014 Family Practice Notebook Updates 2014 Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Family (...) Practice Notebook Updates 2014 Family Practice Notebook Updates 2014 Aka: Family Practice Notebook Updates 2014 , FPN Updates 2014 II. Updates: December 2014 Extensive updates to , and and Extensive updates Updated s and the medications used to treat them Added pearls for (beyond the IO) Updated with newer measures (for XStat, ) No lab marker has sufficient to exclude Antibiotics only regimen for is as effective as in IM dosing is as effective as IV dosing in Updated based on review article Updates

2018 FP Notebook

9. University students' notebook computer use: lessons learned using e-diaries to report musculoskeletal discomfort. (PubMed)

University students' notebook computer use: lessons learned using e-diaries to report musculoskeletal discomfort. The objective of this pilot study was to identify if notebook accessories (ergonomic chair, desktop monitor and notebook riser) combined with a wireless keyboard, mouse and participatory ergonomics training would have the greatest impact on reducing self-reported upper extremity musculoskeletal discomfort in university students. In addition to pre-post computing and health surveys (...) , the Ecological Momentary Assessment was used to capture change in discomfort over time using a personal digital assistant (PDA) as the e-diary. The PDA was programmed with a survey containing 45 questions. Four groups of university students were randomised to either intervention (three external computer accessories) or to control. Participants reported less discomfort with the ergonomic chair and notebook riser based on the pre-post survey data and the e-diary/PDA ANOVA analysis. However, the PDA data

2011 Ergonomics

10. Self-assembled micro-computed tomography for dental education. (PubMed)

with a system for scanning small samples (e.g., individual teeth) during the early stages of research. The self-assembled micro-CT system was constructed using a portable dental X-ray tube, an intraoral digital X-ray detector, a high-precision rotation stage, related bracket accessories, and a notebook computer. Reconstructed images and three-dimensional models of the maxillary right third molar were produced using the self-assembled micro-CT system and an advanced commercially available micro-CT system (...) Self-assembled micro-computed tomography for dental education. This study used available or purchased equipment and an image reconstruction system developed by the college of dentistry to establish a basic self-assembled micro-computed tomography (micro-CT) system. Such a system would be suitable for teaching dental radiology to dental students. Specifically, it could help students to understand the principles governing dental cone-beam computed tomography (CBCT) and provide graduate students

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2018 PLoS ONE

11. Machine learning in computational biology to accelerate high-throughput protein expression (PubMed)

Machine learning in computational biology to accelerate high-throughput protein expression The Human Protein Atlas (HPA) enables the simultaneous characterization of thousands of proteins across various tissues to pinpoint their spatial location in the human body. This has been achieved through transcriptomics and high-throughput immunohistochemistry-based approaches, where over 40 000 unique human protein fragments have been expressed in E. coli. These datasets enable quantitative tracking (...) of entire cellular proteomes and present new avenues for understanding molecular-level properties influencing expression and solubility.Combining computational biology and machine learning identifies protein properties that hinder the HPA high-throughput antibody production pipeline. We predict protein expression and solubility with accuracies of 70% and 80%, respectively, based on a subset of key properties (aromaticity, hydropathy and isoelectric point). We guide the selection of protein fragments

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2017 Bioinformatics

12. Good enough practices in scientific computing (PubMed)

Good enough practices in scientific computing Computers are now essential in all branches of science, but most researchers are never taught the equivalent of basic lab skills for research computing. As a result, data can get lost, analyses can take much longer than necessary, and researchers are limited in how effectively they can work with software and data. Computing workflows need to follow the same practices as lab projects and notebooks, with organized data, documented steps (...) , and the project structured for reproducibility, but researchers new to computing often don't know where to start. This paper presents a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill. These practices, which encompass data management, programming, collaborating with colleagues, organizing projects, tracking work, and writing manuscripts, are drawn from a wide variety of published sources from our daily lives and from our work

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2017 PLoS computational biology

13. Family Practice Notebook Updates 2014

Family Practice Notebook Updates 2014 Family Practice Notebook Updates 2014 Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Family (...) Practice Notebook Updates 2014 Family Practice Notebook Updates 2014 Aka: Family Practice Notebook Updates 2014 , FPN Updates 2014 II. Updates: December 2014 Extensive updates to , and and Extensive updates Updated s and the medications used to treat them Added pearls for (beyond the IO) Updated with newer measures (for XStat, ) No lab marker has sufficient to exclude Antibiotics only regimen for is as effective as in IM dosing is as effective as IV dosing in Updated based on review article Updates

2015 FP Notebook

14. Quantitative Computed Tomography

Quantitative Computed Tomography Quantitative Computed Tomography Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Quantitative (...) Computed Tomography Quantitative Computed Tomography Aka: Quantitative Computed Tomography , QCT II. Indications: Osteoporosis Evaluation See III. Advantages Benefits, but less than Good precision Good monitoring treatment response Selectively assesses cortical and Selective imaging does not confer diagnostic benefits IV. Disadvantages High cost High radiation exposure Images: Related links to external sites (from Bing) These images are a random sampling from a Bing search on the term "Quantitative

2018 FP Notebook

15. Computer Security

Computer Security Computer Security Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Computer Security Computer Security Aka: Computer (...) Security , Network Security From Related Chapters II. Background Security is always balanced with, and often at risk due to other requirements Ease of use (or convenience) Functionality (or mobility) III. Approach: Practice least privelege See computer firewall Disable Web-based remote management Disable WiFi Protected Setup (WPS) See Modify all router default settings Assign an SSID (unique discoverable name) to router that does not give away its owner (e.g. avoid "Smith Router") Change the DHCP

2018 FP Notebook

16. Computer Troubleshooting

Computer Troubleshooting Computer Troubleshooting Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Computer Troubleshooting Computer (...) Troubleshooting Aka: Computer Troubleshooting , Computer Maintenance From Related Chapters II. Precautions Unplug system when working on internal hardware Use anti-static wrist band III. Approach: Physical Tools See for ethernet related tools See Wireless Connection Interface for Wi-Fi and other Wireless Utilities See for software utilities Safety Anti-static wrist band Class C Fire extinguisher (for electrical fires) - know location ral repair kit tools Computer repair kit (various models) Includes screw

2018 FP Notebook

17. Computer Printer

Computer Printer Computer Printer Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Computer Printer Computer Printer Aka: Computer (...) maintenance kit) Vertical lines on page Laser toner cartridge issue (replace toner cartridge) Inkjet rollers have loose ink (clean the ink bottles, rollers) Nonsense characters are printed Printer driver dysfunction (confirm correct printer driver version and reinstall, update or rollback driver) Connection problem (cable or port) Try printing via direct connection from another computer (confirms a non-printer issue) Wrong print color Color Toner low or empty Ink Cartridge low, empty or clogged print

2018 FP Notebook

18. Computer Display

Computer Display Computer Display Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Computer Display Computer Display Aka: Computer (...) Display , Computer Monitor From Related Chapters II. Definitions: General Concepts Display resolution Monitor will have a maximum native resolution (width x height in pixels) Aspect ratio (Width to Height Ratio) Standard aspect ratio is 4:3 High definition aspect ratio is 16:9 (previously 16:10) Refresh rate (RR=repaint/s) or Frame Rate (FR=next-frame/s) Most Computer Monitors are 60 refreshes/s (60 Hz) Contrast with some HD TV refresh rates of 120 Hz or 240 Hz (more appropriate for movies) Adapters

2018 FP Notebook

19. Computer Storage Device

Computer Storage Device Computer Storage Device Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Computer Storage Device Computer (...) Storage Device Aka: Computer Storage Device , Solid State Hard Drive , Mechanical Hard Drive , RAID Array From Related Chapters II. Background: Windows Disk Format Partition Tables GUID Partitition Table (GPT) Typical partition table for most disks since allows virtually unlimited disk size (9 Zettabytes = 9 Billion Terabytes) Master Boot Record (MBR) Older legacy systems and tools (e.g. Microsoft Recovery Tool still creates MBR) allow a maximum of 2 terabytes File systems New Technology File System

2018 FP Notebook

20. Computer Data Center

Computer Data Center Computer Data Center Toggle navigation Brain Head & Neck Chest Endocrine Abdomen Musculoskeletal Skin Infectious Disease Hematology & Oncology Cohorts Diagnostics Emergency Findings Procedures Prevention & Management Pharmacy Resuscitation Trauma Emergency Procedures Ultrasound Cardiovascular Emergencies Lung Emergencies Infectious Disease Pediatrics Neurologic Emergencies Skin Exposure Miscellaneous Abuse Cancer Administration 4 Computer Data Center Computer Data Center (...) Aka: Computer Data Center , Computer System Infrastructure From Related Chapters II. Definitions See for Switches and Routers Uninterruptible Power Supply (UPS) Backup power storage for electronic devices providing up to 30 minutes of backup power supply Server Rack Shelving unit that holds servers (computer units) Standard rack size (42 U), has enough space to hold 42 units Typically holds 15-30 servers/rack (limited by power, cooling, switch space) A single server rack may have impressive

2018 FP Notebook

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